JBrowse 2
by GMOD · io.github.gmod.jbrowse-components
Not TrustedWeb appUnrated★ 296 stars
Source code for JBrowse 2, a modern React-based genome browser
Screenshots
About
JBrowse 2 is a pluggable, open-source genome browser. It runs as a web app, a desktop app (Mac, Windows, Linux), and as embeddable React components. It offers linear, circular, dotplot, synteny, and spreadsheet views, with track types for alignments (BAM/CRAM), variants and structural variants, quantitative/coverage, and more, plus a grammar of graphics that plots any file's fields from config. The web app is "static-site compatible": it is pure client-side JS, CSS, and HTML, so it can be hosted anywhere with no server. The stack is React, TypeScript, and @jbrowse/mobx-state-tree. - Desktop app: downloads - Web app: web quickstart - Embedded React components: embed a Linear Genome View JBrowse 2 is the open-source project GMOD/jbrowse-components (https://github.com/GMOD/jbrowse-components) by GMOD, released under Apache-2.0. Ion packages it unmodified from commit 3dba051d0b04, adding only a manifest, an icon and a storage compatibility script.
Source
Written by GMOD, published to Oikou by Ben Grande.
- ★ 296 stars on GitHub
- Licence: Apache-2.0
- Upstream version v4.3.0
- Built from commit 3dba051d0b04
Age rating
Not rated. Nobody has said who this app is suitable for, so Personal Clouds and the Oikou app treat it as 18+.
What version 4.3.0 may do
Internet
It asks to reach these hosts, and no others:
- jbrowse.org
- any address under jbrowse.org
- genome.ucsc.edu
- api.genome.ucsc.edu
- hgdownload.soe.ucsc.edu
- ftp.ncbi.nlm.nih.gov
- www.ncbi.nlm.nih.gov
- ftp-trace.ncbi.nlm.nih.gov
- s3.amazonaws.com
- any address under amazonaws.com
- unpkg.com
- www.googleapis.com
- accounts.google.com
- api.dropboxapi.com
- content.dropboxapi.com
- api.github.com
- raw.githubusercontent.com
- broadinstitute.github.io
Personal Cloud tools
- Keep a database of its own on your Personal Cloud ion.db
Notifications
It does not send push notifications.
Storage
Up to 16 MB on your Personal Cloud.
Add to Personal Cloud
Sign in to add this web app to a Personal Cloud of yours. It runs there, on your own computer, and you open it from there; nothing is installed on your phone.